PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015900746.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YB
Protein Properties Length: 211aa    MW: 21301.5 Da    PI: 6.946
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015900746.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1871.4e-5820115297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplk+yl+kyrelege
  XP_015900746.1  20 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQKYRELEGE 114
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                     k
  XP_015900746.1 115 K 115
                     7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-5514126IPR009072Histone-fold
SuperFamilySSF471138.23E-4222127IPR009072Histone-fold
PfamPF008086.5E-282589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-215371No hitNo description
PROSITE patternPS0068505672IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-217290No hitNo description
PRINTSPR006151.2E-2191109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MADSDNESGG HNNSGEPSAR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF  60
ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP LKIYLQKYRE LEGEKTSMGK  120
PGEKDGSGGS GGGGGTASGG GGSGGGAVSS GSGGVGYNGV GGMYGGMMMM GHHQGQVYGS  180
GGYHQMGIGG GGGGGGALGK SGGSGGSVKS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-5020110292Transcription factor HapC (Eurofung)
4g92_B3e-5020110292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880819.11e-148PREDICTED: nuclear transcription factor Y subunit B-3-like
RefseqXP_015900746.11e-148PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233103e-80NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLD7UAG57e-96D7UAG5_VITVI; Putative uncharacterized protein
STRINGVIT_19s0015g00440.t012e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.16e-79nuclear factor Y, subunit B3